Index

A

acl() (in module cpnest.nest2pos) adapt_length_scale() (cpnest.sampler.SliceSampler method)

add_proposal() (cpnest.proposal.ProposalCycle method) asnparray() (cpnest.parameter.LivePoint method) autocorrelation() (in module cpnest.nest2pos)

B

bounds (cpnest.model.Model attribute) (cpnest.parameter.LivePoint attribute)

C

check_constraint() (cpnest.proposal.ConstrainedLeapFrog method) CheckPoint checkpoint() (cpnest.cpnest.CPNest method) (cpnest.NestedSampling.NestedSampler method) (cpnest.sampler.Sampler method) close() (cpnest.utils.LogFile method) compute_weights() (in module cpnest.nest2pos) connect_producer() (cpnest.cpnest.RunManager method) ConstrainedLeapFrog (class in cpnest.proposal) consume_sample() (cpnest.NestedSampling.NestedSampler method) copy() (cpnest.parameter.LivePoint method) counter() (cpnest.proposal.ConstrainedLeapFrog method) covariance (cpnest.proposal.EnsembleEigenVector attribute) (cpnest.proposal.EnsembleSliceCorrelatedGaussian attribute) cpnest module CPNest (class in cpnest.cpnest)

cpnest.cpnest module cpnest.model module cpnest.nest2pos module cpnest.NestedSampling module cpnest.parameter module cpnest.plot module cpnest.proposal module cpnest.sampler module cpnest.utils module

D

DefaultProposalCycle (class in cpnest.proposal) DifferentialEvolution (class in cpnest.proposal) dimension (cpnest.parameter.LivePoint attribute)

draw_N_posterior() (in module cpnest.nest2pos) draw_N_posterior_many() (in module cpnest.nest2pos) draw_posterior() (in module cpnest.nest2pos) draw_posterior_many() (in module cpnest.nest2pos)

E

eigen_values (cpnest.proposal.EnsembleEigenVector attribute) eigen_vectors (cpnest.proposal.EnsembleEigenVector attribute) ensemble (cpnest.proposal.EnsembleProposal attribute) EnsembleEigenVector (class in cpnest.proposal) EnsembleProposal (class in cpnest.proposal) EnsembleSlice (class in cpnest.proposal) EnsembleSliceCorrelatedGaussian (class in cpnest.proposal) EnsembleSliceDifferential (class in cpnest.proposal) EnsembleSliceGaussian (class in cpnest.proposal)

EnsembleSliceProposalCycle (class in cpnest.proposal) EnsembleStretch (class in cpnest.proposal) EnsembleWalk (class in cpnest.proposal) estimate_nmcmc() (cpnest.sampler.Sampler method) estimate_nmcmc_on_the_fly() (cpnest.sampler.Sampler method) evolve_trajectory() (cpnest.proposal.ConstrainedLeapFrog method) (cpnest.proposal.LeapFrog method) evolve_trajectory_one_step_momentum() (cpnest.proposal.ConstrainedLeapFrog method) evolve_trajectory_one_step_position() (cpnest.proposal.ConstrainedLeapFrog method)

F

FileHandler (class in cpnest.utils)

force() (cpnest.model.Model method) from_normalised() (cpnest.model.Model method)

G

get_direction() (cpnest.proposal.EnsembleSliceCorrelatedGaussian method) (cpnest.proposal.EnsembleSliceDifferential method) (cpnest.proposal.EnsembleSliceGaussian method) (cpnest.proposal.EnsembleSliceProposalCycle method) get_mcmc_samples() (cpnest.cpnest.CPNest method) get_nested_samples() (cpnest.cpnest.CPNest method) get_posterior_samples() (cpnest.cpnest.CPNest method) get_prior_samples() (cpnest.cpnest.CPNest method) get_sample() (cpnest.proposal.ConstrainedLeapFrog method) (cpnest.proposal.DifferentialEvolution method) (cpnest.proposal.EnsembleEigenVector method) (cpnest.proposal.EnsembleStretch method) (cpnest.proposal.EnsembleWalk method) (cpnest.proposal.LeapFrog method) (cpnest.proposal.Proposal method) (cpnest.proposal.ProposalCycle method)

get_worst_n_live_points() (cpnest.NestedSampling.NestedSampler method) gradient() (cpnest.proposal.HamiltonianProposal method)

H

hamiltonian() (cpnest.proposal.HamiltonianProposal method) HamiltonianMonteCarloSampler (class in cpnest.sampler) HamiltonianProposal (class in cpnest.proposal)

HamiltonianProposalCycle (class in cpnest.proposal) handler (cpnest.utils.LogFile attribute) header() (cpnest.model.Model method)

I

idx (cpnest.proposal.ProposalCycle attribute) in_bounds() (cpnest.model.Model method) increase_left_boundary() (cpnest.sampler.SliceSampler method)

increase_right_boundary() (cpnest.sampler.SliceSampler method) init_plotting() (in module cpnest.plot) insert_sample() (cpnest.sampler.HamiltonianMonteCarloSampler method) inverse_mass_matrix (cpnest.proposal.HamiltonianProposal attribute)

K

keys() (cpnest.parameter.LivePoint method)

kinetic_energy() (cpnest.proposal.HamiltonianProposal method)

L

LeapFrog (class in cpnest.proposal) LivePoint (class in cpnest.parameter) log_integrate_log_trap() (in module cpnest.nest2pos) log_J (cpnest.proposal.DifferentialEvolution attribute) (cpnest.proposal.EnsembleEigenVector attribute) (cpnest.proposal.EnsembleSlice attribute) (cpnest.proposal.EnsembleWalk attribute) (cpnest.proposal.Proposal attribute)

log_likelihood() (cpnest.model.Model method) log_prior() (cpnest.model.Model method) LogFile (class in cpnest.utils) logL (cpnest.parameter.LivePoint attribute) logP (cpnest.parameter.LivePoint attribute) logsubexp() (in module cpnest.nest2pos)

M

mass_matrix (cpnest.proposal.HamiltonianProposal attribute) mean (cpnest.proposal.EnsembleSliceCorrelatedGaussian attribute) MetropolisHastingsSampler (class in cpnest.sampler) Model (class in cpnest.model) module cpnest cpnest.cpnest cpnest.model cpnest.nest2pos cpnest.NestedSampling cpnest.parameter cpnest.plot cpnest.proposal cpnest.sampler cpnest.utils

momenta_distribution (cpnest.proposal.HamiltonianProposal attribute)

N

N (cpnest.proposal.ProposalCycle attribute) names (cpnest.model.Model attribute) (cpnest.parameter.LivePoint attribute) nested_sampling_loop() (cpnest.NestedSampling.NestedSampler method)

NestedSampler (class in cpnest.NestedSampling) new_point() (cpnest.model.Model method) normalise_weights() (cpnest.proposal.ProposalCycle method) Npoints (cpnest.proposal.EnsembleWalk attribute)

O

open() (cpnest.utils.LogFile method)

P

plot() (cpnest.cpnest.CPNest method) plot_chain() (in module cpnest.plot) plot_corner() (in module cpnest.plot) plot_hist() (in module cpnest.plot)

potential() (cpnest.model.Model method) produce_sample() (cpnest.sampler.Sampler method) profile() (cpnest.cpnest.CPNest method) Proposal (class in cpnest.proposal) ProposalCycle (class in cpnest.proposal)

R

random() (in module cpnest.sampler) rebuild_livepoint() (in module cpnest.parameter) resample_mcmc_chain() (in module cpnest.nest2pos) reset() (cpnest.NestedSampling.NestedSampler method) (cpnest.sampler.Sampler method) (cpnest.sampler.SliceSampler method)

reset_boundaries() (cpnest.sampler.SliceSampler method) resume() (cpnest.NestedSampling.NestedSampler class method) (cpnest.sampler.Sampler class method) run() (cpnest.cpnest.CPNest method) RunManager (class in cpnest.cpnest)

S

sample_trajectory() (cpnest.proposal.ConstrainedLeapFrog method) Sampler (class in cpnest.sampler) save_trajectory() (cpnest.proposal.ConstrainedLeapFrog method) set_cycle() (cpnest.proposal.ProposalCycle method) set_ensemble() (cpnest.proposal.EnsembleEigenVector method) (cpnest.proposal.EnsembleProposal method) (cpnest.proposal.EnsembleSliceCorrelatedGaussian method) (cpnest.proposal.HamiltonianProposal method) (cpnest.proposal.ProposalCycle method)

set_integration_parameters() (cpnest.proposal.HamiltonianProposal method) setup_output() (cpnest.NestedSampling.NestedSampler method) setup_random_seed() (cpnest.NestedSampling.NestedSampler method) sighandler() (in module cpnest.cpnest) SliceSampler (class in cpnest.sampler) start() (cpnest.cpnest.RunManager method) StreamHandler (class in cpnest.utils) strsample() (cpnest.model.Model method)

T

to_normalised() (cpnest.model.Model method)

U

uniform() (in module cpnest.model) (in module cpnest.nest2pos) unit_normal() (cpnest.proposal.HamiltonianProposal method) update_eigenvectors() (cpnest.proposal.EnsembleEigenVector method) update_mass() (cpnest.proposal.HamiltonianProposal method)

update_mean_covariance() (cpnest.proposal.EnsembleSliceCorrelatedGaussian method) update_momenta_distribution() (cpnest.proposal.HamiltonianProposal method) update_normal_vector() (cpnest.proposal.HamiltonianProposal method) update_time_step() (cpnest.proposal.HamiltonianProposal method) update_trajectory_length() (cpnest.proposal.HamiltonianProposal method)

V

values (cpnest.parameter.LivePoint attribute)

W

weights() (cpnest.proposal.ProposalCycle property) worker_ns() (cpnest.cpnest.CPNest method)

worker_sampler() (cpnest.cpnest.CPNest method) write_chain_to_file() (cpnest.NestedSampling.NestedSampler method) write_evidence_to_file() (cpnest.NestedSampling.NestedSampler method)

Y

yield_sample() (cpnest.sampler.HamiltonianMonteCarloSampler method) (cpnest.sampler.MetropolisHastingsSampler method) (cpnest.sampler.SliceSampler method)